About: A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes

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type	http://eprints.org/ontology/ArticleEPrint http://eprints.org/ontology/EPrint Article Academic Article
seeAlso	HTML Summary of #81027 A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes
sameAs	A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes
http://eprints.org/ontology/hasAccepted	A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes (PDF)
http://eprints.org/ontology/hasDocument	A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes (PDF) A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes (Other) A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes (Other) A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes (Other) A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes (Other) A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes (Other)
dc:hasVersion	A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes (PDF)
Title	A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes
described by	https://demo.openlinksw.com/about/id/entity/https/www.cs.kent.ac.uk/people/staff/akj22/materials/CO644/export_kar_RDFN3.n3 https://demo.openlinksw.com/about/id/entity/https/raw.githubusercontent.com/annajordanous/CO644Files/main/export_kar_RDFN3.n3
Date	2020-04-20
Creator	Alexandre Plastino A. Freitas Pablo Nascimento Da Silva Fabio Fabris
status	peer reviewed published
Publisher	IEEE
abstract	Understanding the ageing process is a very challenging problem for biologists. To help in this task, there has been a growing use of classification methods (from machine learning) to learn models that predict whether a gene influences the process of ageing or promotes longevity. One type of predictive feature often used for learning such classification models is Protein-Protein Interaction (PPI) features. One important property of PPI features is their uncertainty, i.e., a given feature (PPI annotation) is often associated with a confidence score, which is usually ignored by conventional classification methods. Hence, we propose the Lazy Feature Selection for Uncertain Features (LFSUF) method, which is tailored for coping with the uncertainty in PPI confidence scores. In addition, following the lazy learning paradigm, LFSUF selects features for each instance to be classified, making the feature selection process more flexible. We show that our LFSUF method achieves better predictive accuracy when compared to other feature selection methods that either do not explicitly take PPI confidence scores into account or deal with uncertainty globally rather than using a per-instance approach. Also, we interpret the results of the classification process using the features selected by LFSUF, showing that the number of selected features is significantly reduced, assisting the interpretability of the results. The datasets used in the experiments and the program code of the LFSUF method are freely available on the web at http://github.com/pablonsilva/FSforUncertainFeatureSpaces.
Is Part Of	IEEE/ACM Transactions on Computational Biology and Bioinformatics https://kar.kent.ac.uk/id/repository
Subject	Q Science
list of authors	https://kar.kent.ac.uk/id/eprint/81027#authors
is topic of	https://www.cs.kent.ac.uk/people/staff/akj22/materials/CO644/export_kar_RDFN3.n3 https://raw.githubusercontent.com/annajordanous/CO644Files/main/export_kar_RDFN3.n3
is primary topic of	HTML Summary of #81027 A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes

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